H3ABioNet genomic medicine and microbiome data portals hackathon proceedings
Identifieur interne : 000806 ( Main/Exploration ); précédent : 000805; suivant : 000807H3ABioNet genomic medicine and microbiome data portals hackathon proceedings
Auteurs : Faisal M. Fadlelmola ; Kais Ghedira ; Yosr Hamdi ; Mariem Hanachi ; Fouzia Radouani ; Imane Allali ; Anmol Kiran ; Lyndon Zass ; Nihad Alsayed ; Meriem Fassatoui ; Chaimae Samtal ; Samah Ahmed ; Jorge Da Rocha ; Souad Chaqsare ; Reem M. Sallam ; Melek Chaouch ; Mohammed Farahat ; Alfred Ssekagiri ; Ziyaad Parker ; Mai Adil ; Michael Turkson ; Aymen Benchaalia ; Alia Benkahla ; Sumir Panji ; Samar Kassim ; Oussema Souiai ; Nicola MulderSource :
- Database: The Journal of Biological Databases and Curation [ 1758-0463 ] ; 2021.
Abstract
African genomic medicine and microbiome datasets are usually not well characterized in terms of their origin, making it difficult to find and extract data for specific African ethnic groups or even countries. The Pan-African H3Africa Bioinformatics Network (H3ABioNet) recognized the need for developing data portals for African genomic medicine and African microbiomes to address this and ran a hackathon to initiate their development. The two portals were designed and significant progress was made in their development during the hackathon. All the participants worked in a very synergistic and collaborative atmosphere in order to achieve the hackathon's goals. The participants were divided into content and technical teams and worked over a period of 6 days. In response to one of the survey questions of what the participants liked the most during the hackathon, 55% of the hackathon participants highlighted the familial and friendly atmosphere, the team work and the diversity of team members and their expertise. This paper describes the preparations for the portals hackathon and the interaction between the participants and reflects upon the lessons learned about its impact on successfully developing the two data portals as well as building scientific expertise of younger African researchers.
Url:
DOI: 10.1093/database/baab016
PubMed: 33864455
PubMed Central: 8052916
Affiliations:
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<front><div type="abstract" xml:lang="en"><title>Abstract</title>
<p>African genomic medicine and microbiome datasets are usually not well characterized in terms of their origin, making it difficult to find and extract data for specific African ethnic groups or even countries. The Pan-African H3Africa Bioinformatics Network (H3ABioNet) recognized the need for developing data portals for African genomic medicine and African microbiomes to address this and ran a hackathon to initiate their development. The two portals were designed and significant progress was made in their development during the hackathon. All the participants worked in a very synergistic and collaborative atmosphere in order to achieve the hackathon's goals. The participants were divided into content and technical teams and worked over a period of 6 days. In response to one of the survey questions of what the participants liked the most during the hackathon, 55% of the hackathon participants highlighted the familial and friendly atmosphere, the team work and the diversity of team members and their expertise. This paper describes the preparations for the portals hackathon and the interaction between the participants and reflects upon the lessons learned about its impact on successfully developing the two data portals as well as building scientific expertise of younger African researchers.</p>
<p><bold>Database URL</bold>
: The code for developing the two portals was made publicly available in GitHub repositories: [<ext-link ext-link-type="uri" xlink:href="https://github.com/codemeleon/Database">https://github.com/codemeleon/Database</ext-link>
; <ext-link ext-link-type="uri" xlink:href="https://github.com/codemeleon/AfricanMicrobiomePortal">https://github.com/codemeleon/AfricanMicrobiomePortal</ext-link>
].</p>
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<name sortKey="Allali, Imane" sort="Allali, Imane" uniqKey="Allali I" first="Imane" last="Allali">Imane Allali</name>
<name sortKey="Alsayed, Nihad" sort="Alsayed, Nihad" uniqKey="Alsayed N" first="Nihad" last="Alsayed">Nihad Alsayed</name>
<name sortKey="Benchaalia, Aymen" sort="Benchaalia, Aymen" uniqKey="Benchaalia A" first="Aymen" last="Benchaalia">Aymen Benchaalia</name>
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<name sortKey="Chaqsare, Souad" sort="Chaqsare, Souad" uniqKey="Chaqsare S" first="Souad" last="Chaqsare">Souad Chaqsare</name>
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<name sortKey="Fadlelmola, Faisal M" sort="Fadlelmola, Faisal M" uniqKey="Fadlelmola F" first="Faisal M" last="Fadlelmola">Faisal M. Fadlelmola</name>
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<name sortKey="Mulder, Nicola" sort="Mulder, Nicola" uniqKey="Mulder N" first="Nicola" last="Mulder">Nicola Mulder</name>
<name sortKey="Panji, Sumir" sort="Panji, Sumir" uniqKey="Panji S" first="Sumir" last="Panji">Sumir Panji</name>
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<name sortKey="Sallam, Reem M" sort="Sallam, Reem M" uniqKey="Sallam R" first="Reem M" last="Sallam">Reem M. Sallam</name>
<name sortKey="Samtal, Chaimae" sort="Samtal, Chaimae" uniqKey="Samtal C" first="Chaimae" last="Samtal">Chaimae Samtal</name>
<name sortKey="Souiai, Oussema" sort="Souiai, Oussema" uniqKey="Souiai O" first="Oussema" last="Souiai">Oussema Souiai</name>
<name sortKey="Ssekagiri, Alfred" sort="Ssekagiri, Alfred" uniqKey="Ssekagiri A" first="Alfred" last="Ssekagiri">Alfred Ssekagiri</name>
<name sortKey="Turkson, Michael" sort="Turkson, Michael" uniqKey="Turkson M" first="Michael" last="Turkson">Michael Turkson</name>
<name sortKey="Zass, Lyndon" sort="Zass, Lyndon" uniqKey="Zass L" first="Lyndon" last="Zass">Lyndon Zass</name>
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